Open AppData in Contenta and check that the IDPATH value under the Configuration key is correct.
If the idpath is incorrect, that Configuration will not be indexed (see Editing AppData keys and values).
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Crawler indexes slowly
Troubleshooting
Adding a Contenta Configuration to the Solr Collection
Search workflow
Registry Keys used to Configure the Crawler for all Databases
Modifying AppData settings after installing or upgrading Contenta S1000D